'Append' adds incoming data to the target table.
'Merge' inserts new rows and updates existing rows in the target table. Lists support 'merge' and 'replace' but not 'append', etc. Different options are available depending on the file watcher task and the type of target table. For example, an absolute file path to the Testing Action: When importing data, the following import behaviors are available. You must have at least Folder Administrator permissions in the folder where the files are being copied to. This can be absolute or relative to the current project/folder. Copy File To: Where the file should be copied to before analysis. Leaving this blank will default to the pipeline root. Move to Subdirectory: Move the file to this directory under the destination container's pipeline root. You must have at least Folder Administrator permissions in the folder where files are being moved to. If this field is blank but the watched file is elsewhere, it will be moved to the pipeline root of the current container. If this field is blank, and the watched file is already underneath a pipeline root, then it will not be moved. This must be a relative or absolute container path. Move to Container: Move the file to this container before analysis. If you encounter conflicts, particularly when running multiple file watchers monitoring the same location, try increasing the quiet period. Quiet Period (Seconds): Number of seconds to wait after file activity before executing a job (minimum is 1). For example, "AssayFile123.xls" will not be matched. Note that this default pattern does not match file names that include numbers. If no pattern is provided, the default pattern is used: Details are in this topic: File Watcher: File Name Patterns. We recommend using a regex interpreter, such as, to test the behavior of your file pattern. File Pattern: A Java regular expression that captures filenames of interest and can extract and use information from the filename to set other properties. Include Child Folders: A boolean indicating whether to seek uploadable files in subdirectories (currently to a max depth of 3) of the Location to Watch you specified. Note that if you use the root location here, you should also set a Move to Container location to avoid a potential loop when the system tries to make a copy to the same location "before analysis". Learn more about setting the file and/or pipeline roots for your folder. Site and Application Admins can watch an absolute path on the server's file system (beginning with a "/"), or a location outside the local filesystem, such as on the local machine or a networked drive. Users with "Folder Admin" or higher can watch locations relative to the container root. #Filewatcher watch for file type full#
Use "." to indicate the pipeline root directory itself (or you could also enter the matching full path). This can be a path relative to the local container's pipeline root, beginning with "./".Confirm that this directory exists before saving the file watcher configuration.
Location to Watch: File location to watch for uploadable files.Enabled: Turns on detection and triggering.Assay Provider: Use this provider for running assay import runs.For example, an elevated "service account" could be used. It is strongly recommended that this user has elevated permissions to perform updates, deletes, etc. Run as username: The file watcher will run as this user in the pipeline.By default the option you clicked to open this wizard is selected but you can change this selection from available options on the dropdown menu. Pipeline Task: The type of filewatcher task you want to create.Type: Currently supports one value 'pipeline-filewatcher'.Description: A description for the trigger.Configuration options and on-screen guidance may vary for each task type. The two panels of the Create Pipeline Trigger wizard define a file watcher. Manage File Watcher Triggers: Click to see the table of all currently configured file watchers.Click one of the links below Create a trigger to.If enabled modules include any script pipelines, they will also be listed.Different types of folders include different built in file watcher tasks.Depending on your project's enabled module set, options for trigger creation may vary.In a study folder, you can instead click the Manage tab, then click Manage File Watchers.Navigate to the folder where you want the files to be imported, i.e.
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